PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.012G125700.1
Common NameB456_012G125700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 262aa    MW: 29187 Da    PI: 6.5228
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.012G125700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-2089138255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a++k++g
  Gorai.012G125700.1  89 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAALAYDKAALKFKG 138
                         7********.**********94....45************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.9E-3388147IPR001471AP2/ERF domain
PfamPF008478.7E-1489138IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2289147IPR016177DNA-binding domain
PROSITE profilePS5103224.89589146IPR001471AP2/ERF domain
CDDcd000185.08E-3489147No hitNo description
SMARTSM003801.2E-3789152IPR001471AP2/ERF domain
PRINTSPR003677.5E-1290101IPR001471AP2/ERF domain
PRINTSPR003677.5E-12112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVDHRRHGKR PLPPETSAEK RQGPDDFRTA SWPESADTSA IVTALSQVIG SDDQQLIGFP  60
QSSAPSSAQP HPGPPQLAVQ DQENTTKRHY RGVRQRPWGK WAAEIRDPKK AARVWLGTFD  120
TAEDAALAYD KAALKFKGTK AKLNFPERAQ WNMEAPSPGD SSTMRSEQNP TPLAPPSSWS  180
QESYPHLLQY AQLLSSSNDA DISYYTSNLF NEQQPLSPQL PSMSASSQHY QQDLTRFSTE  240
YQSSEYQGQY GKDFDPSNRS Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2788150467ATERF1
3gcc_A3e-2788150467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458289.10.0PREDICTED: ethylene-responsive transcription factor ERF113-like
SwissprotQ9LYU38e-48EF113_ARATH; Ethylene-responsive transcription factor ERF113
TrEMBLA0A0D2TNJ20.0A0A0D2TNJ2_G
STRINGPOPTR_0001s12990.14e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.14e-38related to AP2 6l
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]